Like most (but not all) chipotles, this one keeps rice, chicken (sometimes steak), cheese, lettuce, corn, etc. in the back that hasn’t been contaminated. Ask before you order and they are happy to serve you from the back.
Note: the beans (both red and black) and hot salsa have been suspect for gluten
Note: salads and bowls are gluten free, anything utilizing tortillas are not (e.g, tacos, quesadillas, etc.), the chips are also not free from cross.