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Local picks

Unique bagel spots in San Diego

Made for those who seek out unconventional bagel preparations that break from the standard bakery mold.

Based on 567 Opinions
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Updated June 2026
01
Ultreya Coffee and Tea image 1
Ultreya Coffee and Tea image 2
Ultreya Coffee and Tea image 3
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Small coffee shop blends cozy indoor and outdoor seating with a local micro art and apparel shop. Atmosphere feels inclusive and welcoming, with strong Wi-Fi and outlets for working. Offers unique bagel selection and a gift shop featuring candles and merchandise.

Bagels come with unique toppings like chili crisp cream cheese and jalapeรฑo cheese. The Happy Hippie bagel on rosemary sea salt stands out, alongside a varied selection including vegan and gluten-free options.

Drinks stand out for their unique flavors and are crafted with high-quality ingredients. The menu offers an excellent array of signature beverages that blend creativity and care.

People are saying

"This cafe has a lovely, laid-back atmosphere."

"You have to try their creative bagel sandwiches, especially the Happy Hippie."

"I loved the unique, tasty coffee options here."

Good to know

1

Ultreya Coffee and Tea hosts community events regularly.

2

The cafรฉ offers a selection of vegan options.

3

They sell day-old pastries at a discounted price.

02
Honey Cafe & Store image 1

Cozy cafe with boho decor and pet-friendly indoor and outdoor seating creates a welcoming, home-like atmosphere. Calm energy suits reading or working, while occasional live music adds vibrancy. Unique focus on authentic Turkish pastries and healthy menu options sets it apart.

Salmon lox bagel comes open-face with microgreens and fresh dill. Turkish bagels taste delicious and pair well with coffee.

Unique pet-themed gifts stand out alongside a peanut latte that offers a distinct, flavorful twist on coffee.

People are saying

"The peanut latte at this cafe is unique and flavorful."

"The bagels here feel like a deep breath away from the chaos."

"The staff here is so friendly and welcoming."

Good to know

1

Honey Cafe is pet-friendly, allowing customers to bring their furry friends.

2

They offer a great variety of healthy options, including smoothie bowls and avocado toast.

3

The cafe is suitable for both quick bites and leisurely breakfasts.

03
KOS COFFEE CO. image 1
Coffee shop

Modern minimalistic space offers plenty of seating inside and outside with natural lighting and cozy, welcoming atmosphere. Music stays at a comfortable level, creating a calm and relaxing environment suitable for work or conversation.

Fresh bagels come with airy texture and chipotle cream in the breakfast sandwich. Cream cheese pairs well with the bagels, and the asiago bagel offers a subtle chew and good flavor.

Unique drinks like mastic coffee and Turkish coffee stand out with flavors not found elsewhere. The menu includes distinctive pastries that complement the unusual beverage choices.

People are saying

"The coffee here is amazing, especially the peanut butter latte."

"I loved the breakfast bagel sandwich with chipotle cream."

"Their Turkish coffee and pastries are so unique and delicious."

Good to know

1

KOS COFFEE CO. is pet-friendly and welcomes furry companions.

2

Parking can be tricky due to its downtown location.

3

Expect to pay around $14 for two drinks.

04
Chiefy Cafe image 1
Coffee shop

Small, no-frills cafe with limited indoor seating and a vibrant outdoor patio featuring sidewalk tables and a walk-up window. Atmosphere feels lively and pet-friendly, with dog treats and water bowls available outside. Music often includes funky bossa nova, creating a relaxed and enjoyable vibe.

Jalapeno cheese bagels stand out with savory flavors paired with fillings like turkey, bacon, and avocado. Options include a vegetarian egg sandwich and the WOW sandwich, all served fresh and filling.

Fresh, unique pastries and coffee specials like a protein latte stand out here. The waffle sandwich and avocado toast offer distinct breakfast and brunch choices.

People are saying

"I enjoyed the great coffee and bagel sandwiches."

"The bagel sandwiches here are so fresh and delicious."

"The waffle sandwich here is a unique and delicious breakfast option."

Good to know

1

Expect to pay around $60 for two breakfast sandwiches and two smoothies.

2

The cafe closes and stops taking orders 30 minutes before the listed end time.

3

There is not much seating inside the cafe, making it cozy but crowded.

05
ASA Bakery image 1

Japanese-style bakery offers bright, airy space with indoor and outdoor seating and archway shelving adding architectural depth. Atmosphere ranges from cozy and inviting to loud and lively, supporting socializing and casual dining. Hidden speakeasy and sushi bar add unique features beyond typical bakery settings.

Mochi bagels stand out with their fresh, chewy texture and subtle sweetness. The everything mochi bagel is soft and flavorful, enjoyable even without cream cheese.

Pastries show a unique Japanese touch with creative flavors like mentaiko bread and apple brioche featuring a tiny syrup tube. Drinks include a Sakura latte, a cherry-flavored option not commonly found elsewhere.

People are saying

"This bakery's Japanese baked goods are authentic and flavorful."

"The pastries here are unique, especially the Naruto croissant."

"I wish I had ordered five of just the curry bread."

Good to know

1

Their baked goods sell out before 2pm, so it's best to go early for the most options.

2

The Naruto pastries sell out by 12 noon and are not made again after selling out.

3

ASA Bakery is cashless, so customers need to bring their card or use mobile payment methods.

06
Baci Coffee image 1
Coffee shop

Long hallway leads into a large cafe with three themed seating areas and a secret speakeasy room. Atmosphere feels calm and charming, with interactive gratitude tree adding a unique touch. Plenty of indoor seating with outlets and wifi supports studying or meetings.

Fresh smoked salmon tops the bagel along with cream cheese, tomato, and capers. The lox bagel offers a solid combination of flavors.

Secret speakeasy room creates a cozy vibe. The ambience and decor stand out as interesting and unique. Products offered also have a distinctive character.

People are saying

"The coffee here has such a nice, calming vibe."

"The atmosphere here is uniquely charming and cozy."

"The lox bagel was topped with fresh smoked salmon and cream cheese."

Good to know

1

Reservations are required for the speakeasy room on holidays and weekends.

2

Parking is very limited and located off the road.

3

They close at 3 pm daily.

07
The Keep Coffee image 1
Coffee shop

Spacious coffee shop with a raw, modern vibe and ample seating including a grand piano centerpiece. Atmosphere feels peaceful and relaxed, often accompanied by 90s R&B music. Power outlets line the walls, making it suitable for remote work and studying.

Garlic cream cheese stands out on the bagels, offering a tasty and rich flavor. Bagels pair well with drinks like Thai tea latte, making the combo worth the wait despite the price.

Drinks stand out with unique flavors like espresso-orange juice and Thai tea latte with cold foam. The ambiance feels peaceful and cute, offering a wider selection than typical chains.

People are saying

"This cafe's unique drinks and awesome desserts are a must-try."

"You have to try their unique drinks like the Harvest Moon or Summer."

"I found the garlic cream cheese bagel pretty good."

Good to know

1

Parking is limited and costs $4 nearby; no free parking available.

2

The Keep Coffee closes at 3:45 PM, not 4:00 PM.

3

They do not accept cash; only card payments are allowed.

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San Diego, California

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