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New Yorkers 1st Choice
Best of San Diego

Healthy Mexican food

Mexican food that focuses on healthy ingredients without sacrificing the bold flavors you expect.

Based on 727 Opinions
+724
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Updated May 2026
01
Taco Time Cantina image 1
Taco Time Cantina image 2
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Bright colors and beautiful decor create an inviting space with both indoor and outdoor seating, including a cozy patio with heaters and cover. Atmosphere feels authentic and relaxing, suitable for casual dining with fresh air and friendly energy. A standout feature is the fantastic salsa bar offering a range of heat levels.

Tacos here burst with fresh, quality ingredients and avoid seed oils. Standout dishes include the Birria Nachos and the Surf and Turf burrito, both packed with flavor and generous portions.

Food uses healthy oils instead of seed oils. Tacos come with organic tortillas and wild caught mahi mahi, making them fresh and healthy.

People are saying

"The salsa bar is fantastic, with so many tasty options."

"The Mexican food here is bursting with flavor and generously filled."

"These healthy foods are so delicious and packed with flavor."

Good to know

1

Taco Time Cantina offers unique taco options not available anywhere else.

2

The chef makes everything daily from scratch with over 20 years of experience.

3

Expect a 2% credit card surcharge not listed on the menu.

02
Daffodil Cafe image 1

Bright space with fresh wooden furniture and live plants creates a cozy, relaxed vibe. Music plays softly, featuring 70s soul and smooth jazz, supporting quiet conversation or work. Seating includes couches and cushioned booths, inviting comfort throughout visits.

Breakfast includes a Bacon/Egg/Cheese Burrito and a vegan burrito option. The burritos come with fresh ingredients and bold flavors.

Certified organic strawberry matcha stands out here. Smoothies and bowls use fresh, healthy ingredients that keep the food satisfying and good for you.

People are saying

"The cafe staff here are so cheerful and welcoming."

"The healthy foods here are fresh, flavorful, and perfectly balanced."

"I highly recommend the vegan burrito and avocado toast."

Good to know

1

They validate parking for up to an hour.

2

The cafe serves breakfast until 2:30 PM.

3

They offer vegetarian options like the Mediterranean bowl.

03
Nate's Garden Grill image 1
American restaurant

Rustic farm motif blends with a vintage cottage vibe surrounded by a plant nursery and animals. Live music plays loudly, creating a lively and energetic atmosphere. Outdoor patio welcomes dogs, adding to the casual, neighborly feel.

Fish tacos with mahi-mahi stand out as a clean, tasty option. Tempeh tacos and burgers also offer delicious choices.

Food focuses on organic and healthy ingredients with many vegan options. Meals offer a fresh, wholesome taste suitable for breakfast or lunch.

People are saying

"I loved the live music here; it was superb."

"You have to try the fish tacos; they're amazing."

"I thought the healthy foods here were a hidden gem."

Good to know

1

Happy hour runs from 4-7pm on weekdays with great prices on drinks.

2

Brunch is available on Saturdays and Sundays with a special menu.

3

Trivia night happens every Wednesday at 7pm with a fun atmosphere.

04
LuckyBolt Kitchen + Bakery image 1

Small, cozy space with outdoor seating and a warm atmosphere. Offers farm-to-table pastries and artisan breads with a focus on fresh, local ingredients. Popular for generous breakfast burritos and a quiet, inviting vibe.

Breakfast burritos stand out with generous size and homemade spicy salsa. Chicken and avocado add fresh flavor without too much salt.

Food features healthy ingredients and avoids weird additives. Local produce is sourced to keep meals fresh and nutritious. Vegetarian options are well-covered and convenient for busy schedules.

People are saying

"The artisan bread and baked goods here are awesome."

"I loved the fresh, healthy ingredients used in their food."

"Their breakfast burritos are the best Mexican food I've ever had."

Good to know

1

Thursday night pizza is a recent addition to the menu.

2

All items are farm-to-table and made with the freshest ingredients.

3

They are accepting online pre-orders with at least 48 hours' notice for pickup.

05
Little Italy Mercato Farmers' Market image 1

Multi-block farmers' market offers ocean views and a diverse cultural mix with a chill vibe. Live music and a dog-friendly atmosphere add to the lively, colorful scene. Narrow passages can feel crowded, but the overall energy remains relaxed and engaging.

Tamales stand out with rich, authentic flavors. Pozole offers a bold, adventurous taste that invites trying new dishes.

Organic and artisanal products dominate the stalls, with sweet fruits and unique mushrooms standing out. Vibrant organic tomatoes and vegetables from Suzie’s Farm add to the diverse healthy options.

People are saying

"This market has tons of vendors and great food options."

"It's a fun way to see many local businesses and enjoy the atmosphere."

"I ate the best tamales I have ever had."

Good to know

1

The market operates every Wednesday from 9:30 AM to 1:30 PM and Saturday from 8 AM to 2 PM.

2

Expect a lively atmosphere with many food vendors and local artisans.

3

Bring cash for vendors as some may not accept cards.

06
Food Bowl Market & Deli image 1

Large, modern grocery store with a well-stocked deli and butcher counter offers fresh produce and premade foods. Atmosphere feels friendly and pleasant with courteous workers, though the store is notably cold inside. Serves as a key neighborhood market with quality meats and flavorful deli items.

Tacos come sizable and fresh, with carnitas available only on weekends. Burritos often include free guacamole, and the carne asada options pack serious flavor with all the fixings. Chips and salsa are made in house and stand out for their taste.

Fresh meat and a wide variety of organic fruits and vegetables fill the shelves. The deli and meat section offers healthy options at prices lower than larger competitors.

People are saying

"You've gotta try the made-to-order Mexican food at this Market."

"The deli's gourmet sandwiches and fresh meat counter are amazing."

"I found their Cali burrito to be the best Mexican food in San Diego."

Good to know

1

The market offers a wide variety of fresh produce, meat, and pantry items.

2

Expect a clean and well-organized shopping environment.

3

The butcher counter provides high-quality meat options, including carne asada.

07
Señor Mangos image 1
Juice shop

Bright juice shop offers affordable smoothies and acai bowls with fresh fruit and generous toppings. Lines form but move quickly, creating a steady, casual flow. Options include healthy snacks and spicy tortas, appealing to a diverse crowd seeking quick, tasty treats.

Tortas stand out with fresh bread and options like queso fresco vegetarian, chicken, loma, and turkey varieties. Jalapeños come with the turkey torta, adding a nice kick.

Many options include healthy snacks and spicy treats. Juices taste fresh and healthy, though smoothies need a no sugar request for true health.

People are saying

"I found the smoothies here to be fresh, flavorful, and packed with real fruit."

"The chicken torta here is delicious and always fresh."

"I found their healthy foods, like fruit salads, to be delicious and affordable."

Good to know

1

Expect a line during peak hours, but it moves quickly.

2

Smoothies are made fresh with real ingredients and no added sugar unless requested.

3

The acai bowl costs $9.95 and is quite filling.

08
Fresheria image 1
Health food restaurant

Small, cozy café with laid-back beachy vibe and broad menu featuring healthy, flavorful options including vegetarian and vegan dishes. Seating includes metal chairs indoors and outdoor tables, though outdoor seating can be unstable. Offers outlets and wifi for working in a casual setting.

Baja Bowl delivers a flavor explosion with quinoa, black beans, grilled chicken, avocado, pico de gallo, and lime vinaigrette. Tacos, especially the cauliflower ones, stand out as a game-changer, while the Tinga Torta packs lots of flavor and fresh lettuce.

Fresh, healthy, and flavorful meals come quickly in a chill, no-fuss setting. The food feels consistently fresh and tasty, making it a solid choice for a healthy meal on the go.

People are saying

"The food here is fresh, healthy, and delicious."

"The Mexican food here is fresh, flavorful, and packed with texture."

"I found the healthy foods here to be fresh and delicious."

Good to know

1

Fresheria offers an extensive menu with breakfast and lunch options.

2

The prices are reasonable, especially for the large portion sizes.

3

Expect a variety of vegetarian and vegan options on the menu.

09
Pichudo Mexican Grill image 1
Mexican restaurant

Outdoor patio with fire pits and heat lamps creates a warm, inviting atmosphere. Mostly outdoor seating blends with a full bar and fun music for a lively, comfortable vibe. Organic, fresh ingredients complement the modern, pleasant setting.

Tacos stand out with pork belly and fresh, tasty ingredients. Burritos use blue corn masa and balance spicy salsa with sweet, savory sauces. Happy hour offers half-price tacos and draft beers every day.

Food is all organic and grass-fed, focusing on fresh and healthy ingredients. Dishes like the Baja bowl with wild shrimp and organic chicken combine great taste with health.

People are saying

"The food here is so fresh, organic, and delicious."

"This Mexican food is the highest quality I've ever had."

"I found the tacos to be so good."

Good to know

1

Happy hour runs daily from 3-6 pm with half-price tacos and draft beers.

2

Taco Tuesday features 50% off tacos and $5 margaritas during happy hour.

3

Parking is limited with no street parking available.

10
Corner House Cafe image 1

Outdoor seating in a succulent garden with covered tables and shade creates a relaxing environment. The atmosphere feels cozy and serene amid a corporate area. The spot combines a smoothie bar with Mexican food and sandwiches, offering fresh, hearty acai bowls and seasoned fries that stand out.

Lunch lines often wrap around due to the good Mexican food. The spot serves both Mexican dishes and sandwiches under one roof.

Smoothies and bowls offer healthy, flavorful options. The peanut butter açaí bowl stands out as a quick, nutritious snack choice.

People are saying

"The food here is amazing, especially the sandwiches."

"The Mexican food here is so good, the lunch line wraps around."

"I found the peanut butter açaí bowl to be an amazing healthy food."

Good to know

1

The cafe offers outdoor seating and has room for bikes or parking your car.

2

The food is often made to order, which sometimes causes a small wait.

3

There is plenty of parking available.

11
El Pescador Fish Market image 1

Fish market and restaurant combine with fresh seafood display behind a glass counter. Outdoor patio lined with cacti offers a relaxed coastal vibe and spacious seating options. The atmosphere feels buzzy and inviting, drawing people who appreciate fresh fish and casual dining.

Fresh fish serves as the base for tacos, burritos, and sandwiches with options like yellowtail tuna and shrimp. The fish tacos stand out for their freshness and flavor, and combo plates include fresh shrimp tacos. Burritos cost around $25 before tip.

Fresh seafood stands out with options like yellowtail tuna burrito and seabass that are both healthy and locally sourced. The clam chowder also offers a fresh and healthy choice among the dishes.

People are saying

"The seafood here is so fresh and delicious."

"The fish tacos here are huge and delicious."

"The healthy foods here are so fresh, especially the seafood."

Good to know

1

El Pescador Fish Market operates on a first come, first serve basis; no reservations accepted.

2

Expect long lines on Saturday afternoons, especially during peak hours.

3

Parking can be challenging; consider arriving early to secure a spot.

12
Valley Farm Market La Jolla image 1

Market combines local butcher shop feel with a full kitchen and organic fresh products. Atmosphere reflects a community vibe with booths offering unique items like hats and healing apothecaries. Offers high-quality meats and specialty produce, attracting those seeking premium food options.

Marinated steak in the shrimp and steak bowls stands out for flavor. The surf & turf burrito serves as a common choice. Tacos vary widely, with some being notably poor and slow to prepare.

Offers a good selection of organic fruits and vegetables. Products feel fresh and clearly organic.

People are saying

"This grocery store has a great variety of high-quality meats."

"I found lots of organic and fresh healthy options here."

"The tacos and Baja bowl here are excellent."

Good to know

1

The market offers a good selection of organic fruits and vegetables.

2

Expect a variety of specialty produce, dry goods, and high-quality meats.

3

Parking is really, really rough.

13
California Fish Grill image 1
Seafood restaurant

Seafood restaurant offers clean, modern interior with both indoor and shaded outdoor seating. Atmosphere feels upscale casual and family-friendly, though music volume can be high indoors. Menu features fresh fish dishes like grilled salmon and fish tacos with good flavor and generous portions.

Fish tacos stand out with chunky, fresh fish and crispy battered options. Corn tortillas taste better than many taco shops around town, and the salmon is cooked tender and not dry.

Food comes out fresh and healthy, cooked with a sensible amount of oil. Options focus on being tasty and nutritious.

People are saying

"The fish tacos here are crunchy, delicious, and fresh."

"These fish tacos are crunchy, delicious, and taste fresh."

"I found the food here to be tasty and healthy."

Good to know

1

They offer Taco Tuesday deals with discounted prices on tacos.

2

The parking lot can be hazardous due to nearby businesses, so drive carefully.

3

Ordering is done via kiosk, and no cash is accepted.

14
Tiger Café image 1
Coffee shop

Coffee shop with white and green theme and stained glass windows creates a calming vibe. Atmosphere stays quiet and welcoming with chill music and outdoor seating under umbrellas. Seating is unusual with assigned tables and a small outdoor patio opens onto a busy downtown area.

Breakfast includes a burrito that fuels long days. Drinks feature a horchata-matcha blend with cinnamon spice and a hot horchata option.

Quality drinks and organic food stand out here. The café offers healthy breakfast options with a focus on fresh, wholesome ingredients.

People are saying

"The cafe's coffee and breakfast burritos are top-notch."

"The breakfast burrito was delicious and filling."

"I found healthy breakfast options here."

Good to know

1

You need to order food to secure a table; drinks alone won't suffice.

2

Reservations are required for larger tables, especially during busy hours.

3

Expect higher prices, with lattes around $9 and iced teas at $6.

15
The Fruit Stand image 1
Produce market

Small market packed with local, fresh produce and organic options at affordable prices. Atmosphere feels like a community-focused spot supporting local growers. Offers unique items like fresh fruit sorbet sticks and a variety of herbs, nuts, and snacks.

Fresh produce, salsa, and tortillas stand out here. Chips and salsa rank among the favorites in San Diego.

Most items are organic without the high prices found in supermarkets. Shopping covers all organic needs quickly with produce that tastes great.

People are saying

"I found the freshest, most authentic local produce here."

"I found the freshest, most delicious produce here."

"I found organic healthy foods here without the high prices."

Good to know

1

The Fruit Stand offers a wide variety of fresh, locally sourced produce.

2

Most items are organic and competitively priced compared to supermarkets.

3

Expect to find fresh herbs, vegetables, fruits, and local snacks.

16
Novo Brazil Brewing Mission Valley image 1

Massive space with huge TV screens inside and outdoors creates a sports-focused atmosphere. Large patio with kid-friendly playground and family-friendly environment attracts groups and families. Energy shifts from relaxed to loud and crowded during popular games, offering a versatile setting.

Carne asada fries stand out with their generous toppings and strong recommendation. Carne asada nachos offer tender, well-seasoned meat but sometimes arrive cold.

Meals come in European portions with several healthy options. The menu features a healthy bowl, picanha, and cheese balls.

People are saying

"I thought the food here was really good."

"You have to try the carne asada fries; they're the best Mexican food."

"I loved their healthy bowl and picanha."

Good to know

1

Happy hour runs from 2-6pm daily with discounted drinks and appetizers.

2

The venue is dog-friendly, allowing pets both indoors and outdoors.

3

Large parties of up to 80 people can be accommodated for events.

17
The Barista Botanist image 1

Space fills with plants everywhere and earthy details, creating a calm and fresh vibe. Small and cozy, it offers fast Wi-Fi and spots to charge devices, making it suitable for quick visits or remote work. Floral bouquets and pottery add unique touches to the atmosphere.

Breakfast burritos feature scrambled eggs, sweet potato, avocado, ribeye, and cheese with organic turkey sausage as an option. Wait times can be long, and salsa may run out during service.

Smoothies and lattes use organic ingredients and avoid seed oils. The menu offers grass-fed, regenerative, farm-to-table options with balanced flavors and a wide variety of healthy choices.

People are saying

"The cafe's coffee and smoothies are unique and delicious."

"I loved the wholesome, organic ingredients in their healthy food options."

"The breakfast burrito here is amazing, especially with sweet potato."

Good to know

1

The Barista Botanist gets super busy in the mornings, especially on weekends.

2

There is limited seating available, making it tough to find a spot.

3

Almost everything on the menu is organic and uses quality ingredients.

18
D-K-Che Fruteria image 1

Juice shop offers huge sandwiches and acai bowls with honey-sweetened granola in a warm, chill atmosphere. Regulars expect consistent quality and enjoy a variety of healthy options including salads and tortas. Prices stay reasonable despite inflation pressures.

Tortas here stand out for their huge size and perfect bread that holds together well. Options like the Chicken with Chipotle Torta and torta especial offer solid flavor choices.

Fresh fruit and healthy juices stand out here. Options are organic and affordable, supporting a fit and healthy diet.

People are saying

"Their tortas are huge and delicious, the best in town."

"I found the fresh fruit and healthy juices here to be awesome."

"The takeout tortas here are huge and the torta especial is the best."

Good to know

1

The restaurant does not have bathrooms available for customers.

2

Expect high prices for food portions compared to other places.

3

Avocado usually incurs an extra charge on your order.

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