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The 16 Best Allergen-Friendly Gluten-Free Spots in Japan

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By Gluten Free Eats' gluten-free community

Updated Jul 2025

01
Gluten Free T’s Kitchen

Gluten Free T’s Kitchen

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藤和 六本木 コープ Ⅱ ロック & ロック ビル 2F, 7丁目-8-5 六本木 港区 東京都 106-0032, Japan

Dedicated GF MenuVegan Friendly100% Gluten Free100% GF RestaurantDinnerCasualAllergen FriendlyCeliac Friendly100% GFRestaurantAsianLunchBrunchCafeDeliveryTake AwayOutdoor SeatingKid FriendlyVegetarian
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02
Shochikuen Cafe

Shochikuen Cafe

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2-chōme-7-6 Nishiasakusa, Taito City, Tokyo 111-0035, Japan

PizzaVegan OptionsGF OptionsAllergen FriendlyBakeryCoffeeDairy Free OptionsKid FriendlyLunchTake AwayVegetarian OptionsBread ItemsBurgersDesserts100% GFCeliac FriendlyBreakfastDinnerBrunchDeliveryPet Friendly
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Fun little vegan and gluten-free cafe. The staff working were friendly and kind. It is a small place and the serves are to the smaller side, too. Maybe more of a snack and treat spot I’d say. We came for lunch and had a pizza and burger plus cake and smoothies and drinks and weren’t full after. The rainbow cake looks beautiful, but wasn’t too flavorful. Tiramisu was more enjoyable. Great alternative cafe if on the search for gluten-free and vegan or dairyfree sweat and savory treats!

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03
waco crepes

waco crepes

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6-chōme-355-1 Miyagawasuji, Higashiyama Ward, Kyoto, 605-0801, Japan

Dedicated GF MenuVegan Friendly100% Gluten FreeVegetarian OptionsWaffles / CrepesBeerDessertsLunchCafeBrunchAllergen FriendlyDairy FreeOutdoor SeatingTake AwayKid FriendlyCeliac Friendly100% GFDedicated GF FryerBreakfastDeliveryRestaurant
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Mel Griffin

Amazing. We ordered two savory and two sweet crepes and their matcha lattes. Everything was delicious and the staff is so friendly. The place is small so go early for seats.

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04
CHOICE

CHOICE

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Japan, 〒605-0009 Kyoto, Higashiyama Ward, Ōhashichō, 89−1 鈴木形成外科ビル 1F

Celiac FriendlyVegan OptionsGF OptionsTake AwayDeliveryCasualAllergen FriendlyBreakfastBrunchCoffeeDairy Free OptionsLunchVegetarian OptionsKnowledgeable StaffBurgersDessertsPancakesPizza100% GFPastaDinner
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Anne Namuth

The whole place is gluten free. Between 3 and 5 pm they only serve dessert and drinks. The parfait is phenomenal.

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05
Heianraku

Heianraku

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Celiac friendly

6-chōme-7 Tenmanmachi, Takayama, Gifu 506-0025, Japan

Vegan OptionsGF OptionsAllergen FriendlyAsianDairy Free OptionsDinnerTake AwayVegetarian OptionsKnowledgeable StaffDedicated GF FryerLunchDeliveryCeliac Friendly
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Vero .Ibril

Super nice place, run by a couple who couldn't be more charming! Super attentive. Suitable for celiacs and vegans. My daughter is celiac, and when we told them, they explained that they were extremely careful with cross-contamination, which was very appreciated. You pay 4,000 yen per person, but they give you four starters to try, five gyozas, a main course, a drink, and dessert. Everything was delicious. We couldn't finish everything, so we were able to take it home. If I go back to Takayama, I'll definitely be back. I can't fault it at all. (The dish in the photo is from the vegan menu.)

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