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The 50 Best Gluten-Free Mexican Restaurants in San Diego

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By Gluten Free Eats' gluten-free community

Updated Jul 2025

01
El Tianguis Rolled Taquitos

El Tianguis Rolled Taquitos

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100% Dedicated Gluten-Free

2810 El Cajon Blvd, San Diego, CA 92104, USA

GF OptionsDedicated GF MenuVegan Friendly100% Gluten FreeMexicanCeliac FriendlyVegan OptionsAllergen FriendlyDairy Free OptionsDeliveryDinnerKid FriendlyLunchTake AwayVegetarian OptionsDedicated GF FryerTacosCasual100% GFCocktails
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Margaret Fell-Gordon

DELICIOUS!!! The flavor was mouthwatering! TOTALLY GLUTEN FREE TOO! First time I’ve had a quesadilla on a small tortilla in years no dining out. Highly recommended.

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Dedicated gluten-free menu
02
Peace Pies

Peace Pies

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100% Dedicated Gluten-Free

4230 Voltaire St, San Diego, CA 92107, USA

GF OptionsMexicanDedicated GF Menu100% Gluten FreeCeliac FriendlyVegan OptionsDedicated GF Kitchen Space100% GF RestaurantDairy Free OptionsDinnerLunchTake AwayVegetarian OptionsSeparate OvenKnowledgeable StaffDessertsKid FriendlyOutdoor Seating100% GFDedicated GF FryerBreakfastDeliveryPet FriendlyRestaurant
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Casey Cromwell

Great 100% gluten free spot! It is also raw and vegan, so it does not have the most traditional meals and desserts but they are still very yummy. I enjoyed the various raw desserts we ordered and my cashew cheese quesadilla.

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Dedicated gluten-free menu
03
Evolution

Evolution

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Accommodating

2965 Fifth Ave, San Diego, CA 92103, USA

GF OptionsMexicanBread ItemsBurgersDessertsTacosLunchDinnerVeganGrab & GoDeliveryTake AwayOutdoor SeatingKid FriendlyVegetarian
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Nasser Salomon

Evolution is a true gem for anyone seeking exceptional plant-based cuisine. As someone who values both vegan and gluten-free options, I was glad to discover this restaurant that offers both. The kitchen clearly takes pride in making everything fresh from scratch, and you can absolutely taste the difference in every bite. While the interior seating is limited, the atmosphere actually adds to the charm of the dining experience. The staff are knowledgeable about the ingredients and care about ensuring every guest has a great meal. Don’t skip dessert! Their gluten-free vegan desserts are absolutely divine and prove that dietary restrictions don’t mean sacrificing your indulgences. Evolution has mastered the art of creating delicious, wholesome food that happens to be vegan. Highly recommend for vegans, those with gluten sensitivities, and really anyone who appreciates freshly prepared food. I plan to be returning soon!​​​​​​​​​​​​​​​​ Enjoy eating more plant based foods.

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GF options marked
04
Trilogy Sanctuary

Trilogy Sanctuary

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100% Dedicated Gluten-Free

7650 Girard Ave #400, La Jolla, CA 92037, USA

GF OptionsSmoothiesTacosMexicanDedicated GF Menu100% Gluten FreeDairy Free Options100% GF RestaurantAllergen FriendlyVegan OptionsVegetarian OptionsSeparate OvenKnowledgeable StaffDedicated GF Kitchen SpaceDedicated GF FryerDinnerLunchBreakfastCeliac Friendly100% GFBrunchCafeDeliveryTake AwayPet FriendlyOutdoor SeatingKid FriendlyRestaurant
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Elizabeth Ellis

Great gluten free options as well as dairy free since the restaurant is vegan too!

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Dedicated gluten-free menu
05
Meze Greek Fusion

Meze Greek Fusion

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Celiac friendly

345 Sixth Ave, San Diego, CA 92101, USA

GF OptionsTacosMexicanDeliveryDinnerPet FriendlyMediterraneanOpen Late NightLunchOutdoor SeatingVegan OptionsVegetarian OptionsFriesSeafoodCeliac FriendlyBreakfastBrunchTake AwayBar
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Cynthia Jetson

BEWARE. The Gluten Free (GF) Labels on the menu mean GF options available for that dish, NOT that the dish is gluten free. Talk to your server about your order. I was excited when seeing the GF labels all over the menu, especially when seeing that most of those dishes involved pita bread. Sadly after talking to the bartender I learned that their pita is (obviously) not GF. Their rice pilaf also has soy sauce in it, so do not just assume the dish is GF even though they are labeled GF. Service was great and the food was good. Pricey, but normal for the gaslamp area and it was very tasty.

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Gluten-free options are marked