Atly Logo

The 28 Best Gluten-Free Cafés in San Diego

Gluten Free UsersGluten Free UsersGluten Free Users
492+

By Gluten Free Eats' gluten-free community

Updated Jul 2025

01
Snooze, an A.M. Eatery

Snooze, an A.M. Eatery

Gluten Free Icon

Accommodating

8861 Villa La Jolla Dr #509, La Jolla, CA 92037, USA

GF OptionsBreakfastDedicated GF MenuVegan Friendly100% Gluten FreeVegetarian OptionsCasualKid FriendlyPancakesBread ItemsAmericanKnowledgeable StaffLunchBrunchDeliveryTake AwayPet FriendlyOutdoor SeatingBarCafeCocktails
Gluten Free Users
Gluten Free Users
Gluten Free Users
Learn more
Profile Image
Nicki Ohrstrom

The best gluten free choices! The server was so fun & personable!

Gluten Free Menu Icon
Gluten-free options are marked
02
Trilogy Sanctuary

Trilogy Sanctuary

Gluten Free Icon

100% Dedicated Gluten-Free

7650 Girard Ave #400, La Jolla, CA 92037, USA

GF OptionsSmoothiesTacosMexicanDedicated GF Menu100% Gluten FreeDairy Free Options100% GF RestaurantAllergen FriendlyVegan OptionsVegetarian OptionsSeparate OvenKnowledgeable StaffDedicated GF Kitchen SpaceDedicated GF FryerDinnerLunchBreakfastCeliac Friendly100% GFBrunchCafeDeliveryTake AwayPet FriendlyOutdoor SeatingKid FriendlyRestaurant
Gluten Free Users
Gluten Free Users
Gluten Free Users
Learn more
Profile Image
Elizabeth Ellis

Great gluten free options as well as dairy free since the restaurant is vegan too!

Gluten Free Menu Icon
Dedicated gluten-free menu
03
Caffè Calabria

Caffè Calabria

Gluten Free Icon

Accommodating

3933 30th St Suite 2, San Diego, CA 92104, USA

GF OptionsItalianPizza100% Gluten FreeBreakfastLunchDinnerOpen LateCafeCocktailsDeliveryTake AwayPet FriendlyOutdoor Seating
Gluten Free Users
Gluten Free Users
Gluten Free Users
Learn more
Profile Image
Marcel Fafard

Caffe Calabria is one of my new favorites. The gluten free pizza here is the best I've ever had. Amazing bar, and coffee roasting on site.

Gluten Free Menu Icon
GF options marked
04
Phatties Bake Shop

Phatties Bake Shop

Gluten Free Icon

100% Dedicated Gluten-Free

4143 Voltaire St, San Diego, CA 92107, USA

CasualKid FriendlyTake AwayDessertsVegan OptionsGF Options Marked on MenuGF OptionsCeliac FriendlyBakeryBread ItemsBagelsSandwichesAllergen FriendlyDairy FreeCafeBrunchBreakfastLunchVegetarianOutdoor SeatingDeliveryPet Friendly100% GF
Gluten Free Users
Gluten Free Users
Gluten Free Users
Learn more
05
Snooze, an A.M. Eatery

Snooze, an A.M. Eatery

Gluten Free Icon

Celiac friendly

3940 Fifth Ave, San Diego, CA 92103, USA

GF OptionsCocktailsBrunchBreakfastAllergen FriendlyDairy Free OptionsDeliveryKid FriendlyLunchOutdoor SeatingTake AwayVegan OptionsVegetarian OptionsBeerBread ItemsPancakesCafeKnowledgeable StaffCasualAmericanSandwichesBarPet FriendlyCeliac Friendly
Gluten Free Users
Gluten Free Users
Gluten Free Users
Learn more

The service was lovely and as someone with coeliac disease, I felt very safe eating here (the server let me know that the original owner’s wife is celiac, and so that made me feel like they would have a good understanding of cross-contamination). The eggs and hashbrowns were just OK and the chicken sausage and the pancake that I had were pretty good.

Gluten Free Menu Icon
Gluten-free options are marked