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The 29 Best Gluten-Free Bakeries in Japan

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By Gluten Free Eats' gluten-free community

Updated Apr 2025

01
Shochikuen Cafe

Shochikuen Cafe

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100% Dedicated Gluten-Free

2-chōme-7-6 Nishiasakusa, Taito City, Tokyo 111-0035, Japan

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Catherine Serpell

It was so good I went back twice in one day! Such a cosy little cafe with really delicious food. I enjoyed a mango smoothie, the iconic rainbow cake, a matcha tiramisu and the tamago burger. Everything exceeded my expectations. The rainbow cake was the perfect level of sweetness (often I find gluten free foods are overly sweet and not enjoyable). My favourite was definitely the burger, the tofu skin texture and flavour was soooo tasty!! Highly highly recommend to anyone looking for yummy GF and vegan food 🤗

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02
ONDEN House - Gluten-Free and Guilt-Free Cafè -

ONDEN House - Gluten-Free and Guilt-Free Cafè -

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100% Dedicated Gluten-Free

5-chōme-16-5 Jingūmae, Shibuya City, Tokyo 150-0001, Japan

GF Options100% GFCeliac FriendlySeparate GF MenuSeparate OvenKnowledgeable StaffDedicated GF Kitchen SpaceBakeryLunchBread ItemsPizzaDessertsBreakfastDinnerBrunchTake AwayPet FriendlyKid Friendly
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Bernhard Wohlmacher

Went there twice during our Tokyo stay and will come again for sure. They are super friendly and gluten-free only, also vegan available and allergens are clearly marked, so super safe for anyone struggling with allergens. The food is absolutely amazing and super affordable, too! The best curry buns I had in Tokyo, banana muffins are also a must-try!

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03
Comeconoco Gluten-free Laboratory & Cafe 大阪天満橋店

Comeconoco Gluten-free Laboratory & Cafe 大阪天満橋店

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100% Dedicated Gluten-Free

Japan, 〒540-0034 Osaka, Chuo Ward, Shimamachi, 2-chōme−2−3 101

CoffeeBreakfastCeliac FriendlyGF MenuAsianGF Options100% GF RestaurantDedicated GF Kitchen SpaceLunchSandwichesBakeryCasualBrunchTake AwayKnowledgeable StaffBread ItemsSeparate OvenSeparate GF MenuDessertsPasta100% GFDelivery
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Amazing! Amazing! Lovely staff and a cosy little cafe. We arrived late in the day, 5.30 (close at 6pm) and they accommodated us for a quick dessert. They had sold out of their rice flour bread so couldn’t get the sandwiches. Highly recommend.

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04
Comme'N Gluten Free

Comme'N Gluten Free

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100% Dedicated Gluten-Free

7-chōme-19-12 Okusawa, Setagaya City, Tokyo 158-0083, Japan

GF OptionsSmoothiesBakeryLunchBread ItemsDessertsSandwichesCeliac Friendly100% GFDeliveryTake Away
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まなみ

Gluten-free that you won't get tired of eating! Komun Theater opens! ! Speaking of bread at Kuhonbutsu! Comun. Across the street is a completely gluten-free bakery. I was interested in it, but I didn't have a chance, so I finally got around to it✨ ----------Order---------- ■Melon bread (324 yen) ■Croque Monsieur (648 yen) ■Melon bread The surface is crispy and the inside is somewhat reminiscent of steamed bread. Moderately sweet and gentle to eat. As expected, it's rice flour. ■Croque Monsieur I was hooked on comun for a while, and it all started with the béchamel sauce. If you can find something that is also gluten-free, you have no choice but to buy it! When I warmed it up in the microwave as the staff taught me, the dough became fluffy and soft. And the cheese and sauce overflows. As expected, the sauce is exquisite, and it's gluten-free, which is amazing. The ham had a nice accent and I really enjoyed it! Another benefit of rice flour is that it makes your stomach feel light after eating. There is a long line at Comun, but this one is relatively easy to buy, so I'd like to visit again! Thank you for the meal✨

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05
Beicon

Beicon

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Accommodating

2-chōme-6-3 Togoshi, Shinagawa City, Tokyo 142-0041, Japan

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めしみマリア

I bought this because it was gluten free! It had rice flour in it and was chewy and delicious. Dice-shaped bread seems to be popular. It's written as rice soul and read as bacon. I could just call it tedious. The inside of the store is quite small. Takeout only. The video was shot with permission 🎵

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