Top 29 Gluten-Free Bakeries to Explore in Japan

Your curated guide to gluten-free dining options, with detailed reviews and recommendations for safe celiac-friendly meals.

Shochikuen Cafe

2-chōme-7-6 Nishiasakusa, Taito City, Tokyo 111-0035, Japan
Gluten Free Icon100% Dedicated Gluten-Free
PizzaVegan OptionsAllergen FriendlyBakeryCoffeeDairy Free OptionsKid FriendlyLunchTake AwayVegetarian OptionsBread ItemsBurgersDesserts100% GFBreakfastDinnerBrunchDeliveryPet Friendly
A vibrant hidden gem with a cozy vibe, serving eye-catching rainbow cake and other delicious vegan treats perfect for couples or a casual date.

People are saying
View more
Tyler Knip
Tyler Knip
Nice they have a vegan/gluten free option. Pricey.

Menu
View menu
Dedicated gluten-free menu

ONDEN House - Gluten-Free and Guilt-Free Cafè -

5-chōme-16-5 Jingūmae, Shibuya City, Tokyo 150-0001, Japan
Gluten Free Icon100% Dedicated Gluten-Free
100% GFSeparate GF MenuSeparate OvenKnowledgeable StaffDedicated GF Kitchen SpaceBakeryLunchBread ItemsPizzaDessertsBreakfastDinnerBrunchTake AwayPet FriendlyKid FriendlyDelivery
This charming walk-up bakery offers unique rice flour creations, making it a must-visit gem near Shibuya for delicious take-out delights.

People are saying
View more
4 no
4 no
It's been a while since I ate pizza, I can't believe it's gluten free It was delicious!

Menu
View menu
Dedicated gluten-free menu

Comeconoco Gluten-free Laboratory & Cafe 大阪天満橋店

Japan, 〒540-0034 Osaka, Chuo Ward, Shimamachi, 2-chōme−2−3 101
Gluten Free Icon100% Dedicated Gluten-Free
CoffeeBreakfastGF MenuAsian100% GF RestaurantDedicated GF Kitchen SpaceLunchSandwichesBakeryCasualBrunchTake AwayKnowledgeable StaffBread ItemsSeparate OvenSeparate GF MenuDessertsPasta100% GFDelivery
This spot offers chewy rice flour bread and an ever-changing selection of scones, attracting locals and tourists alike with its inviting vibe.

People are saying
View more
Marcus S
Marcus S
Amazing! Amazing! Lovely staff and a cosy little cafe. We arrived late in the day, 5.30 (close at 6pm) and they accommodated us for a quick dessert. They had sold out of their rice flour bread so couldn’t get the sandwiches. Highly recommend.

Menu
View menu
Dedicated gluten-free menu

Comme'N Gluten Free

7-chōme-19-12 Okusawa, Setagaya City, Tokyo 158-0083, Japan
Gluten Free Icon100% Dedicated Gluten-Free
SmoothiesBakeryLunchBread ItemsDessertsSandwiches100% GFDeliveryTake Away
Long lines for custom sandwiches and unique smoothies are worth it for the delicious, thoughtfully-prepared options at this gluten-free spot.

People are saying
View more
Nadine
Nadine
Entirely gluten free bakery. Lots of options but some are very pricey. Quality is very good!

Menu
View menu

Beicon

2-chōme-6-3 Togoshi, Shinagawa City, Tokyo 142-0041, Japan
Gluten Free IconAccommodating Gluten-Free
Bakery
Discover a unique bakery in a charming shopping district, offering a range of rice flour products with clear labeling and a cozy atmosphere.

People are saying
View more
いわみ
いわみ
A gluten-free bakery that uses carefully selected ingredients. It was chewy and delicious.

Menu
View menu

biossa

2-chōme-10-19 Kasuga, Bunkyo City, Tokyo 112-0003, Japan
Gluten Free Icon100% Dedicated Gluten-Free
BakeryBreakfastBrunchKid FriendlyLunchTake AwayVegan OptionsVegetarian Options100% GF RestaurantGF MenuDedicated GF Kitchen SpaceKnowledgeable StaffBread ItemsSeparate OvenSeparate GF MenuDesserts100% GFDelivery
This cozy spot serves unique rice flour bread with diverse flavors, perfect for a light, delicious start to your day without any heaviness.

People are saying
View more
ゆうさんぽ
ゆうさんぽ
While strolling around Myogadani, I suddenly came across the ``biossa gluten-free bakery specialty store''. Attracted by the word gluten-free, I decided to buy the "salted butter roll" to try it out. When I took a bite, I couldn't help but smile at how delicious it was. The rich flavor of butter and the perfect amount of salt spreads in your mouth, and the chewy texture is irresistible. Butter rolls are delicious enough to eat on their own, but they also go well with a variety of dishes and side dishes. You can imagine what kind of combinations you would enjoy. There are many delicious bakeries in Myogadani, so if the bread at the first shop you stumble across is so delicious, you may be satisfied without trying other bakeries. However, if you definitely add ``Biossa gluten-free bakery specialty store'' to your repertoire, you will be able to live a richer baking life. The bread at this shop is completely gluten-free (rice flour bread). When you think of gluten-free bread, you have the impression that you have to compromise on taste and texture, but this is not the case at all with the salted butter rolls here. In fact, I found it to be so perfectly delicious that I didn't even realize it was gluten-free. When you come to Myogadani, be sure to stop by ``biossa gluten-free bakery specialty store.'' I'm sure you'll be waiting for an encounter with delicious bread that will change your concept of gluten-free.

Menu
View menu
Dedicated gluten-free menu

otaco

3-chōme-5-1 Asakusa, Taito City, Tokyo 111-0032, Japan
Gluten Free Icon100% Dedicated Gluten-Free
100% GF RestaurantGF MenuBakeryGrab & GoCasualTake AwayDesserts100% GF
Experience a delightful selection of incredibly fluffy cakes with a subtle sweetness that'll have you coming back for all the flavors.

People are saying
View more
Colleen Larson
Colleen Larson
As someone with celiac’s, it’s amazing when you can find a place that has such delicious treats that are gluten free! We stopped here after visiting Senso-ji temple. The shop is small and very cute. The staff was super friendly. And the cake was so soft and perfectly subtly sweet. We added the whipped cream which made this a heavenly food experience that I’ll be thinking about for a long time. Thank you!

Menu
View menu
Dedicated gluten-free menu

Rizriant

1-chōme-30-2 Kichijōji Kitamachi, Musashino, Tokyo 180-0001, Japan
Gluten Free Icon100% Dedicated Gluten-Free
BakeryDessertsDeliveryTake Away100% GF
This cozy spot is perfect for a quick treat, boasting a unique array of baked goods and an inviting atmosphere for a sweet escape.

People are saying
View more
Graham Haas
Graham Haas
This place is amazing. A quick walk from Kichijōji station, there's several pleasant spots to tuck in and eat. My wife is celiac and she had a life-restoring Ratatouille moment of eating a cake and creampuff unlike anything she had eaten since she was young in Europe and able to have gluten. Thank you so much for a great treat!

Menu
View menu
Dedicated gluten-free menu

nukafuku (ぬかふく)

1300 Gōra, Hakone, Ashigarashimo District, Kanagawa 250-0408, Japan
Gluten Free Icon100% Dedicated Gluten-Free
Vegan OptionsDairy Free OptionsKid FriendlyOutdoor SeatingTake AwayVegetarian OptionsDessertsBakeryDedicated GF FryerDelivery100% GF
Enjoy unique and fluffy donuts with a rotating menu of delightful flavors, all in a cozy spot near Gora Station that’s worth the wait!

People are saying
View more
Courtney Radmall
Courtney Radmall
100% gluten free and vegan donut shop. Everything was so delicious. They also sell gluten free ramen packs that are nice to have on the go just in case.

Menu
View menu
Dedicated gluten-free menu

Cocopan Bakery

1-chōme-6-42 Ishikawaakebono, Uruma, Okinawa 904-1107, Japan
Gluten Free Icon100% Dedicated Gluten-Free
BakeryCafeDeliveryTake Away100% GFBreakfastPet Friendly
A unique vegan bakery in Okinawa crafts delightful breads and treats using homemade yeast, making it a must-visit for flavor lovers!

People are saying
View more
Sam Brustad
Sam Brustad
A fantastic 100% gluten free bakery with vegan options. I had the bacon egg sandwich and cheese cake, both of which were delicious. As a coeliac living in Japan I was so happy to find this place!

Menu
View menu
Dedicated gluten-free menu

cafe planet

447-5 Kajiichō, Kamigyo Ward, Kyoto, 602-0841, Japan
Gluten Free Icon100% Dedicated Gluten-Free
PizzaVegan OptionsBakeryBreakfastBrunchDairy Free OptionsPet FriendlyKid FriendlyLunchOutdoor SeatingTake AwayVegetarian OptionsDessertsPastaDinnerCafeDelivery100% GF
This unique vegan spot offers a relaxing vibe, cute dog-friendly atmosphere, and customizable latte art while boasting serene river views.

People are saying
View more
Mechi Barrón
Mechi Barrón
Café planet is a gluten free paradise in Kyoto. Food is very good. I really enjoyed their cookies. The only bad thing is that they are only cash..

Menu
View menu
Dedicated gluten-free menu

Cauldra.と天使のおやつ

10-chōme-1002-14 Minami 3 Jōnishi, Chuo Ward, Sapporo, Hokkaido 060-0063, Japan
Gluten Free Icon100% Dedicated Gluten-Free
BreakfastLunchDinnerBrunchBakeryCafeDeliveryTake AwayRestaurant100% GF
A cozy gem with a stylish interior, offering extensive seasonal menu items that impress with deep flavors and a unique, friendly vibe.

People are saying
View more
Si Pei Tan
Si Pei Tan
Get the Ham and Cheese bread, it is good!! Bread was soft and fluffy too, I am so happy to be able to eat gluten free breads like this :) The staff was really friendly too!

Menu
View menu
Dedicated gluten-free menu

Jiyugaoka Bakery

Japan, 〒152-0035 Tokyo, Meguro City, Jiyūgaoka, 1-chōme−26−9 三笠ビル
Gluten Free IconAccommodating Gluten-Free
BakeryDeliveryTake Away
This stylish spot in Jiyugaoka offers delicious, reasonably priced rice flour bread that’s a must-try for anyone seeking unique flavors.

People are saying
View more
Danelle
Danelle
Amazing gluten free bakery! I’m from Los Angeles and we have nothing like this. Both texture and taste are impeccable and so many options.

Menu
View menu

DANNY CHURROS 天神・ソラリアステージ店

Japan, 〒810-0001 Fukuoka, Chuo Ward, Tenjin, 2-chōme−11−3 Solaria Stage Building B1F
Gluten Free IconCeliac friendly
Take AwayDessertsBakeryCafeDeliveryKid Friendly
Get ready to satisfy your churro cravings with crispy, fresh treats bursting with flavor, perfect for a quick snack on the go!

People are saying
View more
katy ereira
katy ereira
100% gluten free churros

Menu
View menu
Dedicated gluten-free menu

Viennoiserie JEAN FRANÇOIS

Ginza Six Rooftop Garden, 14F 6-chōme-10-11 Ginza, Chuo City, Tokyo 104-0061, Japan
Gluten Free IconAccommodating Gluten-Free
BreakfastBakeryTake Away
This cozy bakery in Ginza SIX boasts unique offerings like limited melon bread and treats from an award-winning chef, making it a must-visit.

People are saying
View more
林玉彰
林玉彰
The French bakery at Ginza No. 6 has a variety of items, with a delicate texture and strong gluten. The chewing process is a little laborious, but the aftertaste is fragrant and long-lasting. I don’t know how long I haven’t eaten such delicious bread. Although there were a lot of people queuing up at the checkout, the cashier was very systematic and quickly digested the flow of people without waiting for a long time.

Menu
View menu

Universal Bakes Nicome

3-chōme-19-13 Kitazawa, Setagaya City, Tokyo 155-0031, Japan
Gluten-free options
BreakfastBakeryDeliveryTake Away
An all-vegan bakery with a unique twist on heavy, dense breads and delicious croissants, perfect for a quiet snack break outside.

People are saying
View more
Christopher Wilson
Christopher Wilson
Fully vegan bakery in Tokyo! Super tasty and awesome to find a vegan and gluten free friendly bakery in Tokyo. We tried a bunch of things and they were all really good! Super sweet staff as well!!

Menu
View menu

Pon de Coffee

Japan, 〒171-0022 Tokyo, Toshima City, Minamiikebukuro, 3-chōme−13−13 村中ビル 1 F
Gluten Free IconAccommodating Gluten-Free
BreakfastLunchDinnerBrunchBakeryCafeDeliveryTake Away
A cozy spot with unique flavors and a focus on quality ingredients, perfect for coffee lovers and those looking for tasty treats.

People are saying
View more
はる
はる
This is a great shop for gluten-free bread. Surprisingly, there aren't any, so I'm glad it's within my range of action. I love using it because it goes well with coffee. .

Menu
View menu

Buckwheat waffle Kurohime foothills

3-chōme-15-1 Nishinippori, Arakawa City, Tokyo 116-0013, Japan
Gluten Free Icon100% Dedicated Gluten-Free
BakeryTake Away100% GF
This cozy spot offers unique, thick, and crispy waffles made from buckwheat and rice flour, perfect for a delightful treat any time of the day.

People are saying
View more
A Mochizuki
A Mochizuki
I stopped by while wandering around Yanaka Ginza! I received a gluten-free waffle 🧇 based on buckwheat flour and rice flour! To the friendly store clerk

Menu
View menu
Dedicated gluten-free menu

komebiyori 小田原店

Japan, 〒250-0011 Kanagawa, Odawara, Sakaechō, 1-chōme−19−18 ロキシー小田原
Gluten-free options
BakeryDeliveryTake AwayDesserts
This hidden gem offers unbelievably moist and fluffy chiffon cakes, scoring top marks in lots of local categories—definitely worth the trip!

People are saying
View more
Yogita M
Yogita M
Very cute small takeaway store. Cash only, gluten free chiffon cakes, and low gluten (not gluten free) baguettes. The staff said the bread contains 10% wheat flour. The plain, hojicha, adzuki and mugwort flavour cakes were very good!

Menu
View menu

米粉のパンと焼菓子 sora no kujira

3-130 Shintomichō, Furano, Hokkaido 076-0033, Japan
Gluten Free Icon100% Dedicated Gluten-Free
BakeryDeliveryTake Away100% GF
Cozy spot with a peaceful vibe, perfect for enjoying unique baked goods made with rice flour; cashless payments and terrace seating enhance the experience.

People are saying
View more
TK Z
TK Z
・Gluten-free bakery using rice flour in Furano ・I think it's convenient because there are only a few in the area. ・There are terrace seats, and you can use a toaster and microwave inside the store, so you can eat piping hot bread on the spot. ・It was a convenient payment environment as I was able to use cards and code payments, and I am grateful for the cashless system.

Menu
View menu
Dedicated gluten-free menu

Akari House Swiss Bakery

6666-2 Toyosato, Nozawaonsen, Shimotakai District, Nagano 389-2502, Japan
Gluten-free options
BreakfastBakeryDeliveryTake AwayLunchDinnerCafeRestaurant

People are saying
View more
Anton Southwell
Anton Southwell
Really nice food and they do a great gluten free pizza, always a win in my books!

Menu
View menu

グルテンフリースイーツmug

660-5 Fussa, Tokyo 197-0011, Japan
Gluten Free Icon100% Dedicated Gluten-Free
GF MenuBakeryDairy Free OptionsDesserts100% GFDeliveryTake AwayPet FriendlyKid Friendly
Get ready for a delightful treat with a variety of scrumptious, filling pastries that keep everyone coming back for more!

People are saying
View more
NANAE YOSHIDA
NANAE YOSHIDA
When I was having lunch at a nearby restaurant called Otamaju, I saw a flyer and found out about it. As it is a gluten-free sweet, Don't worry about that! I asked. These are the most delicious sweets ever. All muffins except those containing chocolate, chiffon cake, and, I bought gateau chocolat, which my 4th grader loves. without feeling guilty, I bought it as a morning gift. I ate one to taste in the car on the way home, and... Really delicious, Texture, exquisite blend, sweetness, Everything is very delicious, I don't snack, I ate it with all my heart's desire. The few remaining muffins, Morning of the next day, I also received it in the morning the next day, No change in taste, I thought it might have helped because it wasn't nearby. If you go nearby, I will also buy everything except chocolate. ( ´ ▽ ` )

Menu
View menu
Dedicated gluten-free menu

Kome Pan

Japan, 〒111-0034 Tokyo, Taito City, Kaminarimon, 1-chōme−16−8 丹野ビル 1F
Gluten Free IconAccommodating Gluten-Free
BakeryDeliveryTake Away
Experience a cozy spot with chewy, flavorful rice flour bread and stylish vibes, perfect for a quick and satisfying snack with no waste.

People are saying
View more
Yildiz Asan
Yildiz Asan
There are gluten-free products, but they are made in the same bakery - so they are all contaminated. Couldn't buy anything. It's a shame because everything looked delicious.

Menu
View menu

Una Camera Livera

101 2-chōme-12-5 Nakano, Nakano City, Tokyo 164-0001, Japan
Gluten-free options
Allergen FriendlyBakeryBreakfastBrunchCoffeeDairy Free OptionsLunchOutdoor SeatingTake AwayVegan OptionsVegetarian OptionsBread ItemsDessertsSandwichesDinnerDeliveryPet FriendlyKid Friendly
A cozy shared cafe with a unique menu that changes by the day, featuring tasty rice flour baguettes and a home-like vibe for families.

People are saying
View more
Kyoko
Kyoko
Review for こめパンカフェ (Monday & Tuesday) A really good gluten-free cafe serving rice flour baguette sandwiches. My chicken sandwich was delicious, and I really enjoyed the Satsuma potato pottage. The baguette was one of the best gluten-free baguettes I’ve ever had. It was crunchy on the outside, and soft and chewy on the inside. Next time I will try to come earlier in the day so I can buy cinnamon rolls. The staff were very friendly and welcoming. They also understood wheat and gluten sensitivities very well.

Menu
View menu


Nana Kitchen

Japan, 〒170-0005 Tokyo, Toshima City, Minamiōtsuka, 3-chōme−30−12 アキユキレジデンス 1F
Gluten-free options
LunchBakeryCafeDeliveryTake AwayKid Friendly
A unique spot offering a cozy vibe with rice flour treats, organic options, and even its own vending machine; perfect for a casual visit.

People are saying
View more
Konru kuay
Konru kuay
This is a shop where you can eat gentle and delicious bread that does not use milk or eggs and uses simple ingredients. ○About the store Business days are limited to Tuesdays and Sundays. However, there are opportunities to purchase it at other stores, such as those sold on consignment at Kojikumiya and Ikebukuro on Fridays. Details can be found on Instagram. In addition to selling bread, it also functions as a coffee shop, so you can eat and drink the bread you purchase with a set of side dishes. Unusually, there is a vending machine. The only rice flour vending machine I've ever seen is the one in Okayama. The staff at the store (Yukiko Sekine and others) were very responsive. Since the only payment methods were cash or PayPay, I went to withdraw the money, but they kindly kept the bread for me while I was there. ○About bread Currently, there are three types of rice flour-based products: bread, horohoro cookies, and chiffon, and the others are wheat-based. Therefore, although rice flour bread is gluten-free, contamination is possible. All the breads have simple ingredients and seem to be of good quality. Also, most breads are labeled with information on ingredients, etc., so you can choose and purchase with confidence. ○About what I bought #rice flour bread It's quite elastic and chewy. Moist inside. The bottom side is hard and filling. The sweetness is gentle but not too weak, and it's delicious enough to keep eating as is. Of course, the binding is good, and none of the parts fall apart (some powder does fall off). #Rice flour cookies It's crumbly but easy to eat. It's so flavorful that you can eat 4 of them right away. Personally, I wish there were more varieties of rice flour bread and more stores and opportunities to buy it. However, the rice flour bread is so delicious that it's worth going just to buy it, so I'll continue to go here.

Menu
View menu

My Bánh Mì by Gluten Free TOKYO

Japan, 〒150-0001 Tokyo, Shibuya City, Jingūmae, 1-chōme−20−4 Axia原宿 307
Gluten Free Icon100% Dedicated Gluten-Free
Vegan OptionsGF Menu100% GF RestaurantDedicated GF Kitchen SpaceBakeryBreakfastBrunchCoffeeDairy Free OptionsKid FriendlyLunchOutdoor SeatingTake AwayVegetarian OptionsKnowledgeable StaffBread ItemsSeparate OvenSeparate GF MenuBeerDessertsSandwichesWaffles / Crepes100% GF
Discover a haven of budget-friendly, veggie-beloved dining that'll make you crave for more, only marred by an unfortunate insect incident one time.

People are saying
View more
Carly Brender
Carly Brender
Gluten free sandwiches in a very cute cafe in Harajuku! Safe and yummy.

Menu
View menu
Dedicated gluten-free menu

CUBREAD

24-2 Akazawa, Itō, Shizuoka 413-0233, Japan
Gluten Free Icon100% Dedicated Gluten-Free
BakeryTake Away100% GF

People are saying
View more
Kathleen Wadsworth
Kathleen Wadsworth

Menu
View menu
Dedicated gluten-free menu

Kinokuniya Bakery

Japan, 〒181-0013 Tokyo, Mitaka, Shimorenjaku, 3-chōme−46−4 アトレヴィ 5F
Gluten-free options
BakeryDeliveryTake Away

People are saying
View more
Andrew Foster
Andrew Foster

Menu
View menu

© 2025 Atly - Your Local Guide to Gluten-Free Dining